BIOINFORMATICS Data for Publications Curated through Dryad. Learn moreRapamycin Rejuvinated Oral Health in Aging Mice - 2020 Learn moreRapamycin Rejuvinated Oral Health in Aging Mice - 2020 McLean Lab Repositories All Repositories All Repositories MiDAS using Nextflow and AWS Batch MiDAS using Nextflow and AWS Batch Binsanity using Nextflow and AWS Batch Binsanity using Nextflow and AWS Batch Oral Microbiome Meta-Genomics (OMMG) Workflow for Oral Microbiome Samples Oral Microbiome Meta-Genomics (OMMG) Workflow for Oral Microbiome Samples R Markdowns now available on RPubs Rapamycin Rejuvinated Oral Health in Aging Mice - 2020 Rapamycin Rejuvinated Oral Health in Aging Mice - 2020 PROJECT DATA 16S rRNA (Amplicon) Sequencing Modified SHI medium supports growth of a disease‐state subgingival polymicrobial community in vitro - Bioproject: PRJNA6633916 - 2020 Modified SHI medium supports growth of a disease‐state subgingival polymicrobial community in vitro - Bioproject: PRJNA6633916 - 2020 Rapamycin Rejuvinated Oral Health in Aging Mice - Bioproject: PRJEB35672 - 2020 Rapamycin Rejuvinated Oral Health in Aging Mice - Bioproject: PRJEB35672 - 2020 Klebsiella and Providencia notch a tag-team victory in a battle royale of oral bacteria: isolates- BioProject: PRJNA525688 2019 Klebsiella and Providencia notch a tag-team victory in a battle royale of oral bacteria: isolates- BioProject: PRJNA525688 2019 Candidatus Saccharibacteria Genome sequencing and assembly- BioProject: PRJNA384792- 2019 Candidatus Saccharibacteria Genome sequencing and assembly- BioProject: PRJNA384792- 2019 healthy and stomatitis denture microbiome-BioProject:PRJNA292354- 2015 healthy and stomatitis denture microbiome-BioProject:PRJNA292354- 2015 Whole Genome Shotgun (WGS) Sequencing Candidatus [Bacteroides] periocalifornicus isolate:12B- BioProject : PRJNA289925-2015 Candidatus [Bacteroides] periocalifornicus isolate:12B- BioProject : PRJNA289925-2015 Porphyromonas gingivalis strain MP4-504, whole genome shotgun sequencing project-BioProject- PRJNA305025-2015 Porphyromonas gingivalis strain MP4-504, whole genome shotgun sequencing project-BioProject- PRJNA305025-2015 Schaalia odontolytica strain XH001, whole genome shotgun sequencing project- BioProject: PRJNA298751- 2016 Schaalia odontolytica strain XH001, whole genome shotgun sequencing project- BioProject: PRJNA298751- 2016 Schaalia odontolytica strain XH001, whole genome shotgun sequencing project-BioProject:298751--2016 Schaalia odontolytica strain XH001, whole genome shotgun sequencing project-BioProject:298751--2016 Veillonella parvula strain SHI-1, whole genome shotgun sequencing project-BioProject-PRJNA305444-2016 Veillonella parvula strain SHI-1, whole genome shotgun sequencing project-BioProject-PRJNA305444-2016 RNA Sequencing Gene expression of wild-type Porphyromnas gingivalis 33277 vs the transposon-mutant, J5-c5-GEO Accession No: GSE122289- 2019 Gene expression of wild-type Porphyromnas gingivalis 33277 vs the transposon-mutant, J5-c5-GEO Accession No: GSE122289- 2019 The distinct immune-stimulatory capacities of Porphyromonas gingivalis strains 381 and 33277 are determined by the fimB allele and gingipain activity- GEO Accession No :GSE128899- 2019 The distinct immune-stimulatory capacities of Porphyromonas gingivalis strains 381 and 33277 are determined by the fimB allele and gingipain activity- GEO Accession No :GSE128899- 2019 Klebsiella and Providencia notch a tag-team victory in a battle royale of oral bacteria- BioProject: PRJNA525517- 2019 Klebsiella and Providencia notch a tag-team victory in a battle royale of oral bacteria- BioProject: PRJNA525517- 2019 Characterization of the trehalose utilization operon in Streptococcus mutans reveals that the TreR transcriptional regulator is involved in stress response pathways and toxin production- BioProject: PRJNA433360- 2018 Characterization of the trehalose utilization operon in Streptococcus mutans reveals that the TreR transcriptional regulator is involved in stress response pathways and toxin production- BioProject: PRJNA433360- 2018 Edlund, A., Yang, Y., Yooseph, S., He, X., Shi, W. & McLean, J.S*. Uncovering complex microbiome activities via metatranscriptomics during 24 hours of oral biofilm assembly and maturation. Microbiome 6, 217 (2018)PRJNA398963 Edlund, A., Yang, Y., Yooseph, S., He, X., Shi, W. & McLean, J.S*. Uncovering complex microbiome activities via metatranscriptomics during 24 hours of oral biofilm assembly and maturation. Microbiome 6, 217 (2018)PRJNA398963 Meta-omics uncover temporal regulation of pathways across oral microbiome genera during in vitro sugar metabolism-BioProject- PRJNA264728-2014 https://trace.ncbi.nlm.nih.gov/Traces/study/?acc=SRP116173&o=acc_s%3Aa Meta-omics uncover temporal regulation of pathways across oral microbiome genera during in vitro sugar metabolism-BioProject- PRJNA264728-2014 https://trace.ncbi.nlm.nih.gov/Traces/study/?acc=SRP116173&o=acc_s%3Aa https://trace.ncbi.nlm.nih.gov/Traces/study/?acc=SRP116173&o=acc_s%3Aa Single-Cell Sequencing and Mini-Metagenomics Read More Read More
