BIOINFORMATICS Data for Publications Curated through Dryad. Learn moreRapamycin Rejuvinated Oral Health in Aging Mice - 2020 McLean Lab Repositories All Repositories MiDAS using Nextflow and AWS Batch Binsanity using Nextflow and AWS Batch Oral Microbiome Meta-Genomics (OMMG) Workflow for Oral Microbiome Samples R Markdowns now available on RPubs Rapamycin Rejuvinated Oral Health in Aging Mice - 2020 PROJECT DATA 16S rRNA (Amplicon) Sequencing Modified SHI medium supports growth of a disease‐state subgingival polymicrobial community in vitro - Bioproject: PRJNA6633916 - 2020 Rapamycin Rejuvinated Oral Health in Aging Mice - Bioproject: PRJEB35672 - 2020 Klebsiella and Providencia notch a tag-team victory in a battle royale of oral bacteria: isolates- BioProject: PRJNA525688 2019 Candidatus Saccharibacteria Genome sequencing and assembly- BioProject: PRJNA384792- 2019 healthy and stomatitis denture microbiome-BioProject:PRJNA292354- 2015 Whole Genome Shotgun (WGS) Sequencing Candidatus [Bacteroides] periocalifornicus isolate:12B- BioProject : PRJNA289925-2015 Porphyromonas gingivalis strain MP4-504, whole genome shotgun sequencing project-BioProject- PRJNA305025-2015 Schaalia odontolytica strain XH001, whole genome shotgun sequencing project- BioProject: PRJNA298751- 2016 Schaalia odontolytica strain XH001, whole genome shotgun sequencing project-BioProject:298751--2016 Veillonella parvula strain SHI-1, whole genome shotgun sequencing project-BioProject-PRJNA305444-2016 RNA Sequencing Gene expression of wild-type Porphyromnas gingivalis 33277 vs the transposon-mutant, J5-c5-GEO Accession No: GSE122289- 2019 The distinct immune-stimulatory capacities of Porphyromonas gingivalis strains 381 and 33277 are determined by the fimB allele and gingipain activity- GEO Accession No :GSE128899- 2019 Klebsiella and Providencia notch a tag-team victory in a battle royale of oral bacteria- BioProject: PRJNA525517- 2019 Characterization of the trehalose utilization operon in Streptococcus mutans reveals that the TreR transcriptional regulator is involved in stress response pathways and toxin production- BioProject: PRJNA433360- 2018 Edlund, A., Yang, Y., Yooseph, S., He, X., Shi, W. & McLean, J.S*. Uncovering complex microbiome activities via metatranscriptomics during 24 hours of oral biofilm assembly and maturation. Microbiome 6, 217 (2018)PRJNA398963 Meta-omics uncover temporal regulation of pathways across oral microbiome genera during in vitro sugar metabolism-BioProject- PRJNA264728-2014 https://trace.ncbi.nlm.nih.gov/Traces/study/?acc=SRP116173&o=acc_s%3Aa https://trace.ncbi.nlm.nih.gov/Traces/study/?acc=SRP116173&o=acc_s%3Aa Single-Cell Sequencing and Mini-Metagenomics Read More
